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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176800481_176811959_R

Intron Information:

Intron Rank:
137816
Intron Class:
major
Intron Phase:
Intron Coordinates:
176800481 - 176811959
Intron Length:
11479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATATATTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCTCATGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.2
0.41
0.9
62.4
38.7
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
52.6
-0
1.8
59.99
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021648
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037330
176799736 - 176812883
13148