About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_176836151_176837016_R

Intron Information:

Intron Rank:
134677
Intron Class:
major
Intron Phase:
Intron Coordinates:
176836151 - 176837016
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TTCATGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCACTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.9
71.5
38.2
Minor 5ss
34.9
-1.7
2.7
35
41
Minor BPS
59.9
0.31
1.9
76.13
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019778
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023892
176726075 - 176837114
111040