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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177227204_177239239_R

Intron Information:

Intron Rank:
130226
Intron Class:
major
Intron Phase:
Intron Coordinates:
177227204 - 177239239
Intron Length:
12036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCTATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84.3
0.77
0.9
76.9
42.1
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
64.8
0.54
1.5
80.9
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034962
177227018 - 177248152
21135