About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177241435_177247810_R

Intron Information:

Intron Rank:
130228
Intron Class:
major
Intron Phase:
Intron Coordinates:
177241435 - 177247810
Intron Length:
6376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CAAGTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79
0.65
0.8
77.4
36.9
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
50
0.08
1.5
62.19
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017265
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034962
177227018 - 177248152
21135