About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177293672_177294420_R

Intron Information:

Intron Rank:
135477
Intron Class:
major
Intron Phase:
Intron Coordinates:
177293672 - 177294420
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGATG
5'SS Class:
major
3'SS Sequence:
CTCTTTTGGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTGGTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
71.3
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
69
0.43
1
67.8
37.8
Minor 5ss
30.6
-2.2
3.2
36.5
41.9
Minor BPS
71.6
0.75
1.3
82.67
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020308
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027252
177286106 - 177294879
8774