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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177297900_177300598_R

Intron Information:

Intron Rank:
141561
Intron Class:
major
Intron Phase:
Intron Coordinates:
177297900 - 177300598
Intron Length:
2699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
CTTATTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTCCCTTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.1
39.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.9
0.74
0.9
80.4
37
Minor 5ss
32
-2.1
3.4
43.9
44.5
Minor BPS
60.8
0.2
1.7
64.57
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048004
177297628 - 177313396
15769