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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177326512_177327519_R

Intron Information:

Intron Rank:
141559
Intron Class:
major
Intron Phase:
Intron Coordinates:
177326512 - 177327519
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.2
0.34
0.9
58.6
36.1
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
89.2
1.21
0.9
92.56
25.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042706
177299168 - 177329204
30037