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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177327805_177329001_R

Intron Information:

Intron Rank:
141560
Intron Class:
major
Intron Phase:
Intron Coordinates:
177327805 - 177329001
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.1
0.48
1.1
72
32
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
60.5
0.41
2
86.57
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023478
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042706
177299168 - 177329204
30037