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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177431021_177437165_R

Intron Information:

Intron Rank:
129278
Intron Class:
major
Intron Phase:
Intron Coordinates:
177431021 - 177437165
Intron Length:
6145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTATTCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
72.3
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.9
0.61
0.9
70.2
35.7
Minor 5ss
39.2
-1.2
2.8
43.8
43.8
Minor BPS
65.6
0.35
1.5
68.83
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016766
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036353
177430634 - 177438367
7734