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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177437415_177439395_R

Intron Information:

Intron Rank:
129276
Intron Class:
major
Intron Phase:
Intron Coordinates:
177437415 - 177439395
Intron Length:
1981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GCTCTCTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78
0.63
0.8
73.4
31.6
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
49
0.01
1.9
65.97
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016766
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024121
177435746 - 177492922
57177