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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177559947_177561409_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
177559947 - 177561409
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCC
5'SS Class:
major
3'SS Sequence:
TTATTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATTTTGAACA
Flanking Amino Acid:
SIAVEAAATSETHNEFYPVP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.4
34.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.7
0.58
1
73.5
40.5
Minor 5ss
47.6
-0.2
2.3
62.8
41.7
Minor BPS
68.7
0.58
1.3
76.68
33.9

Associated Gene:

Gene:
NDFIP2
Ensembl Gene ID:
ENSAPLG00000011385
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018745
177534165 - 177580399
46235
ENSAPLT00000011876
177534165 - 177580399
46235