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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177638254_177639090_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
177638254 - 177639090
Intron Length:
837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTAAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGTATTTAAAA
Flanking Amino Acid:
HQEKETKKEEIVKEEEREKK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
69.3
0.43
1.1
65.1
44.1
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
59.5
0.3
1.6
68.04
38

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377