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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177644853_177645218_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
177644853 - 177645218
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTATTTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACT
Flanking Amino Acid:
PPPAPPSLFTTIYFLLETYD
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.4
70
37.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.7
0.53
1
75.6
38.3
Minor 5ss
26.7
-2.7
4.3
44.6
44.6
Minor BPS
83
1.11
1
92.13
30.1

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377