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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177645379_177646424_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
177645379 - 177646424
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTTTTCATCT
Flanking Amino Acid:
TSGDMDLPPREKPPNKSSMR
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.8
0.65
0.9
71.8
37.8
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
50.3
0.09
1.8
69.63
41.9

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377