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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177646537_177647265_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
177646537 - 177647265
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
GVPTKKTWFDKQNFNRTNSP
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
26.9
Major BPS
100
1.24
0.5
100
0
Major PPT
81.5
0.71
0.9
76.4
37.4
Minor 5ss
30.6
-2.2
3.3
40.3
40.1
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377