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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177656110_177658256_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
177656110 - 177658256
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
GAAATGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTCTGTAATT
Flanking Amino Acid:
DSNEAQKKKQEALRLQQDVR
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.3
0.3
1
58.7
46.6
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
63.8
0.51
2
82.98
39.3

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377