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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177659141_177664313_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
177659141 - 177664313
Intron Length:
5173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCAAG
5'SS Class:
major
3'SS Sequence:
AACAATTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTGATGTAACA
Flanking Amino Acid:
PLKSMKTKTQMQKELLDTEL
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.8
44.3
Major BPS
80
0.75
1
78.6
31
Major PPT
62.3
0.28
0.9
58.5
41.8
Minor 5ss
37.7
-1.4
3.1
48.5
47.3
Minor BPS
49.9
-0
2.2
71.69
40.8

Associated Gene:

Gene:
RBM26
Ensembl Gene ID:
ENSAPLG00000011536
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012096
177623979 - 177674355
50377