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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177677366_177678723_F

Intron Information:

Intron Rank:
131997
Intron Class:
major
Intron Phase:
Intron Coordinates:
177677366 - 177678723
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.8
0.6
0.8
74.8
35.6
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025241
177676347 - 177679878
3532