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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177799320_177804970_R

Intron Information:

Intron Rank:
144525
Intron Class:
major
Intron Phase:
Intron Coordinates:
177799320 - 177804970
Intron Length:
5651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTCCATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.5
0.89
0.6
87.8
22.3
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
55.1
0.24
1.9
75.02
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023256
177799039 - 177805099
6061