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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177805035_177853522_R

Intron Information:

Intron Rank:
144524
Intron Class:
major
Intron Phase:
Intron Coordinates:
177805035 - 177853522
Intron Length:
48488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATGC
5'SS Class:
major
3'SS Sequence:
CCCCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATACAATAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
62.9
38.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.1
0.7
0.7
75.4
26.7
Minor 5ss
31.4
-2.1
3.3
41.3
45.4
Minor BPS
45
-0.5
2.2
56.02
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017291
177804829 - 177853772
48944