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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177836512_177842387_F

Intron Information:

Intron Rank:
141389
Intron Class:
major
Intron Phase:
Intron Coordinates:
177836512 - 177842387
Intron Length:
5876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
AATGGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCACATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
73.5
0.53
1
65.3
44.8
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
64.4
0.53
1.7
81.5
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048415
177836408 - 177846975
10568