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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177836512_177846849_F

Intron Information:

Intron Rank:
141388
Intron Class:
major
Intron Phase:
Intron Coordinates:
177836512 - 177846849
Intron Length:
10338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.8
77.4
41.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039288
177836408 - 177846975
10568