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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177872752_177872841_R

Intron Information:

Intron Rank:
135407
Intron Class:
major
Intron Phase:
Intron Coordinates:
177872752 - 177872841
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTACATGGA
5'SS Class:
major
3'SS Sequence:
TTTCACTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ATATCTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.2
58.9
40.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
74.8
0.56
1
74.9
33.5
Minor 5ss
32.8
-2
3.5
43.2
44.8
Minor BPS
64.6
0.54
2
83.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020269
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036992
177872618 - 177875359
2742