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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177951494_177952270_F

Intron Information:

Intron Rank:
129055
Intron Class:
major
Intron Phase:
Intron Coordinates:
177951494 - 177952270
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.1
0.52
0.9
67
39.3
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
59.4
0.16
1.6
65.25
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019414
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033036
177950660 - 177959832
9173