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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177970066_177971864_R

Intron Information:

Intron Rank:
152959
Intron Class:
major
Intron Phase:
Intron Coordinates:
177970066 - 177971864
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCATATA
5'SS Class:
major
3'SS Sequence:
TTCCCCTGTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GGTTTCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
72.7
38.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
76.4
0.59
0.9
68.8
37.1
Minor 5ss
34
-1.8
2.9
43.2
43.8
Minor BPS
64.5
0.44
1.6
71.49
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024515
177969585 - 177975071
5487