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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177972694_177974670_R

Intron Information:

Intron Rank:
152961
Intron Class:
major
Intron Phase:
Intron Coordinates:
177972694 - 177974670
Intron Length:
1977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
TTAACTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
69.2
35.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.3
0.73
0.9
76.3
37.4
Minor 5ss
36
-1.6
3
49.6
40.5
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024515
177969585 - 177975071
5487