About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_177974747_177977824_R

Intron Information:

Intron Rank:
152955
Intron Class:
major
Intron Phase:
Intron Coordinates:
177974747 - 177977824
Intron Length:
3078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
TTTCCATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTGATCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.8
0.81
0.8
77.5
35.7
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
48.6
-0
2.2
73.27
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029864
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021085
177974600 - 177980507
5908