Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178004475_178008900_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

178004475 - 178008900

Intron Length:

4426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGGCC

5'SS Class:

major

3'SS Sequence:

TTGATGCGGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

TCCTCCTTGATG

Flanking Amino Acid:

PITCHICLGKVRHPVICVNN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

68.8

Major BPS

71.5

0.53

1.1

43.2

Major PPT

48.8

-0

1.3

48.2

44.1

Minor 5ss

-1.6

3.6

50.9

45.8

Minor BPS

69.3

0.46

1.3

65.94

42.7

Associated Gene:

Gene:

OBI1

Ensembl Gene ID:

ENSAPLG00000012233

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012730

178004403 - 178026543

22141