About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178009037_178010003_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178009037 - 178010003
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAG
U12 Branch Point Sequence:
TTTTCCTTCTGT
Flanking Amino Acid:
TPENPCKEIIGGTSESDPIF
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
52
0.05
1.6
51.8
43.6
Major PPT
69.6
0.44
0.9
66.4
40.7
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
44.6
-0.3
3.7
83.49
43.8

Associated Gene:

Gene:
OBI1
Ensembl Gene ID:
ENSAPLG00000012233
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012730
178004403 - 178026543
22141