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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178160738_178161982_F

Intron Information:

Intron Rank:
140552
Intron Class:
major
Intron Phase:
Intron Coordinates:
178160738 - 178161982
Intron Length:
1245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCTGTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.6
0.4
1.1
60.3
44.2
Minor 5ss
41.2
-1
2.9
58.4
45.7
Minor BPS
50.8
0.1
2
73.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032227
178160303 - 178162563
2261