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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178411500_178411684_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
178411500 - 178411684
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
CTCCTCCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGAAGCTCACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.9
42.4
Major BPS
69.8
0.49
1
61
37.5
Major PPT
69.6
0.44
0.9
64.6
30.8
Minor 5ss
26.7
-2.7
2.9
25.7
36.9
Minor BPS
42.7
-0.5
2.1
53.25
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012830
178411354 - 178425139
13786