Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178421210_178421541_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178421210 - 178421541

Intron Length:

332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTCCTCCTA

Flanking Amino Acid:

HPTQKTSFMMFYKQAKDWWL

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

67.8

37.5

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

84.1

0.77

0.7

77.9

30.9

Minor 5ss

32.4

-2

3.1

39.7

40.1

Minor BPS

38.3

-0.8

3.6

66.95

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012291

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021700

178410569 - 178472689

62121

ENSAPLT00000012830

178411354 - 178425139

13786