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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178497250_178501646_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178497250 - 178501646
Intron Length:
4397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCTATGATT
Flanking Amino Acid:
PRSKIAQPVRSFLQPPKPLS
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
82
0.72
0.9
77.3
36.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
68.7
0.67
1.5
87.78
31

Associated Gene:

Gene:
SLAIN1
Ensembl Gene ID:
ENSAPLG00000012744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032447
178497174 - 178545319
48146
ENSAPLT00000013272
178497174 - 178545319
48146