Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178501927_178503825_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178501927 - 178503825

Intron Length:

1899

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

CCTCTCCTAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

CCTCTCCTAACA

Flanking Amino Acid:

SNGISRMQSCIPSPGQLQHR

Intron Amino Acid Position:

400

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

74.3

34.1

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

74.2

0.54

0.9

69.1

Minor 5ss

38.9

-1.3

2.7

34.4

Minor BPS

55.2

0.16

1.7

64.87

41.6

Associated Gene:

Gene:

SLAIN1

Ensembl Gene ID:

ENSAPLG00000012744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032447

178497174 - 178545319

48146

ENSAPLT00000013272

178497174 - 178545319

48146