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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178503991_178512676_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178503991 - 178512676
Intron Length:
8686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTGACATGACT
Flanking Amino Acid:
PEQQPNRINGDKLRRSMPNL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.2
38.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.3
0.82
0.8
84.6
30.3
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
49.9
0.07
2
73.16
43.7

Associated Gene:

Gene:
SLAIN1
Ensembl Gene ID:
ENSAPLG00000012744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032447
178497174 - 178545319
48146
ENSAPLT00000013272
178497174 - 178545319
48146