About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178515403_178517227_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178515403 - 178517227
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACAT
Flanking Amino Acid:
SKAILTPERTGYISRSSPLS
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.2
0.66
0.8
76.5
31.1
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
57.9
0.33
1.7
75.95
41.3

Associated Gene:

Gene:
SLAIN1
Ensembl Gene ID:
ENSAPLG00000012744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032447
178497174 - 178545319
48146