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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178517378_178541568_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178517378 - 178541568
Intron Length:
24191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTA
5'SS Class:
major
3'SS Sequence:
ACATCTGTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
ACATCTGTAACA
Flanking Amino Acid:
KRSLCFRLEQASRWRNLFST
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.8
41.1
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
64
0.32
1
58.2
41.3
Minor 5ss
41.5
-0.9
3.1
56.7
47.4
Minor BPS
55.7
0.17
2
66.11
40.6

Associated Gene:

Gene:
SLAIN1
Ensembl Gene ID:
ENSAPLG00000012744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032447
178497174 - 178545319
48146