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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178729832_178733796_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178729832 - 178733796
Intron Length:
3965

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATATTCTAAAGT
Flanking Amino Acid:
SKEPPIKLPKIIEVGLCEVF
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.7
90.3
25.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.2
0.61
0.9
77.1
36.8
Minor 5ss
25.8
-2.8
3.6
36.7
40.4
Minor BPS
55.3
0.24
2
74.5
42.4

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310