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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178733951_178735666_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178733951 - 178735666
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTATCA
5'SS Class:
major
3'SS Sequence:
TGTTTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTAACT
Flanking Amino Acid:
GLQSEPPEVLESLFQLLLEI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.8
0.76
0.8
78.2
35.3
Minor 5ss
44.4
-0.6
2.7
57.7
46.4
Minor BPS
72.6
0.79
1.7
87.23
39

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310