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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178738707_178743441_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178738707 - 178743441
Intron Length:
4735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCATCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TATGTATTAACT
Flanking Amino Acid:
LEQDGTVALPDCHTEGQNIL
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.3
34.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
76.8
0.6
0.8
71.2
32.9
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
65.3
0.56
1.7
82.01
39.1

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310