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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178744771_178745570_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178744771 - 178745570
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTCCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
GACTGGTTAACT
Flanking Amino Acid:
FDLEKDLHIISTGFDEESAV
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
69.4
41.2
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
75.8
0.58
0.9
71.3
33.1
Minor 5ss
39.1
-1.2
3
57.4
40.4
Minor BPS
48.8
-0
2.4
69.6
46.9

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310