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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178745648_178747181_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178745648 - 178747181
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
GTATTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TATACTGTATTT
Flanking Amino Acid:
FALMKTASGKIYYTGKYQSL
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
68
0.45
1
57.8
39
Major PPT
76.3
0.59
0.9
69.6
41.4
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
46.9
-0.1
2.2
69.39
42.1

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310