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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178747387_178749806_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178747387 - 178749806
Intron Length:
2420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATTTATTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATT
Flanking Amino Acid:
SASKGEDGESTKSRRQSKPY
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.3
0.43
1.1
68.5
40.7
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
64.1
0.52
1.5
78.54
37.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310