Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178773435_178775787_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178773435 - 178775787

Intron Length:

2353

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGTATAGC

5'SS Class:

major

3'SS Sequence:

ATTTTTGATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTATTTTTGATA

Flanking Amino Acid:

LSFPRGSQVAMGCPTLVQAL

Intron Amino Acid Position:

952

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.28

1.1

60.3

38.4

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

74.6

0.55

70.1

Minor 5ss

38.5

-1.3

2.8

48.7

Minor BPS

68.4

0.57

1.1

73.76

31.6

Associated Gene:

Gene:

MYCBP2

Ensembl Gene ID:

ENSAPLG00000012782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013438

178697972 - 178887281

189310