About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178775906_178779201_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178775906 - 178779201
Intron Length:
3296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
ATTCTCTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGGTGTTAATT
Flanking Amino Acid:
GQVFTFGSFSKGQLGRPILD
Intron Amino Acid Position:
992

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
69
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
0.8
73.8
30.7
Minor 5ss
33.8
-1.8
3.2
45.1
43.8
Minor BPS
53.6
0.19
2.1
74.52
43.3

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310