Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178782506_178783591_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178782506 - 178783591

Intron Length:

1086

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACACATT

5'SS Class:

major

3'SS Sequence:

TGCTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTTAA

U12 Branch Point Sequence:

GAAATGTTAAGT

Flanking Amino Acid:

TRSHAALHILGCLDTLAAMQ

Intron Amino Acid Position:

1169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.1

75.3

40.7

Major BPS

63.3

0.33

1.2

55.4

41.7

Major PPT

82.5

0.73

0.7

81.2

30.9

Minor 5ss

43.6

-0.7

3.3

66.1

Minor BPS

44.3

-0.3

2.2

59.16

43.6

Associated Gene:

Gene:

MYCBP2

Ensembl Gene ID:

ENSAPLG00000012782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013438

178697972 - 178887281

189310