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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178783718_178783827_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178783718 - 178783827
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTTATT
Flanking Amino Acid:
EDYSVVNRFESHGGGWGYSA
Intron Amino Acid Position:
1211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
63.9
0.52
1.5
80
36.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310