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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178787038_178788535_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178787038 - 178788535
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TAAATCTTAAAT
Flanking Amino Acid:
NAGQIPQLLYRLPTSDGSAS
Intron Amino Acid Position:
1357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82.9
0.74
0.9
74.1
41
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
65.2
0.56
1.4
76.32
39.3

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310