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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178791720_178792510_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178791720 - 178792510
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAA
5'SS Class:
major
3'SS Sequence:
TTTATGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTATTTATT
Flanking Amino Acid:
LCDLLNCLDQDIQEANFKTS
Intron Amino Acid Position:
1546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.1
34.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.8
81.3
36.3
Minor 5ss
30.3
-2.3
3.4
40
46.1
Minor BPS
53.4
0.19
1.9
78.29
37.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310