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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178794577_178795620_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178794577 - 178795620
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTATTTAATT
Flanking Amino Acid:
ELTASALGSEVDGLNSLHSV
Intron Amino Acid Position:
1684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.8
77
36.7
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
72
0.77
1.4
84.52
36.5

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310